So here's an update. I spoke with my former Chief FI's boss and explained the situation to him. He seemed very displeased with everything.

Ultimately he told me that he does not care if I was right or wrong in leaving and that my personal spats with the Chief should not matter nor affect my ability to land a job. He was very concerned that a former student, who went through the program and than instructed for a couple of years, was now being mistreated and unable to get a job. He felt that this is a terrible message to send about how they treat their former students / employees.

He gave me permission to give his contact info and his word that whatever information was submitted on PRIA would be superseded by what he has to say to the regional. I have since called the regional and left a message with the HR lady that I spoke to yesterday.

Here is the kicker of the whole story, I am currently training for my ATP certificate / Type Rating on a Citation via a scholarship that I received from my 141 school. It's all paid for from from the scholarship from my 141 school. My checkride is next week and than I was suppose to ship off to the airline for training in 2 weeks.