Apparently AA has a problem with military pilots doing it. Seems they changed things this past spring and now only count hours of PIC when the pilot is in a control seat. OP should check out each airline’s time logging requirements in their application to see if any unique wAAy to count hours in app effects them depending on the type of flying they do (originally I thought they were at a foreign carrier then I remembered one US carrier that flies a bus across the pond).

I’d keep logging consistently and alter the presentation of the flight time based on what a perspective company wants. They mostly want similar things but some want specific milestones tabbed and others want specific summary page formats.